Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs17803739 chr7:43603599 A/G 3.59E-5 477 32.23 30.2 15.87 KM Plot
PRAD rs17818073 chr6:19173117 T/C 0.000128 493 30.75 31.87 45.9 KM Plot
PRAD rs17837682 chr7:156352856 C/G 2.49E-5 494 29.17 27.77 31.33 KM Plot
PRAD rs17841171 chr15:83358388 C/T 4.17E-7 494 29.08 30.27 31.18 KM Plot
PRAD rs17841861 chr2:98178927 T/C 6.71E-9 481 30.77 31.65 22.45 KM Plot
PRAD rs1805007 chr16:89986117 A/G 3.94E-8 494 22.65 30.2 31 KM Plot
PRAD rs1806819 chr1:160147965 G/A 5.86E-5 477 31.87 25.67 26.37 KM Plot
PRAD rs181072050 chr1:93665006 A/G 1.07E-8 494 31.28 28.67 9.17 KM Plot
PRAD rs181201029 chr11:129982316 T/C 2.02E-6 493 30.97 31.3 22.8 KM Plot
PRAD rs181222372 chr7:6721683 G/A 3.14E-7 492 31.23 27.03 50.03 KM Plot
PRAD rs181949466 chr2:233197879 C/T 6.94E-11 491 31.25 29 25.87 KM Plot
PRAD rs1820805 chr19:17610210 A/G 0.000185 494 31.28 27.27 32.23 KM Plot
PRAD rs185538379 chr11:6931271 G/A 9.72E-13 490 30.97 29.32 18.13 KM Plot
PRAD rs186520541 chr19:53133230 A/G 4.35E-6 488 30.8 31.18 26.27 KM Plot
PRAD rs186587982 chr7:6721684 A/G 3.14E-7 492 31.23 27.03 50.03 KM Plot